Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs7940606 | chr11:125562715 | A/G | 4.48E-5 | 177 | 16.05 | 11.6 | 4.1 | KM Plot |
| PAAD | rs7941222 | chr11:125563182 | A/G | 7.15E-5 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs7943592 | chr11:125568825 | A/G | 4.48E-5 | 177 | 16.05 | 11.6 | 4.1 | KM Plot |
| PAAD | rs7943827 | chr11:49786202 | G/A | 1.68E-5 | 177 | 15.4 | 15.72 | 0.4 | KM Plot |
| PAAD | rs7943903 | chr11:125568845 | G/A | 4.48E-5 | 177 | 16.05 | 11.6 | 4.1 | KM Plot |
| PAAD | rs7944734 | chr11:125584653 | T/A | 0.000108 | 178 | 16.08 | 14.37 | 5.03 | KM Plot |
| PAAD | rs79487016 | chr7:20653986 | G/A | 1.43E-6 | 178 | 15.55 | 15.5 | 3.67 | KM Plot |
| PAAD | rs79487458 | chr2:70484285 | T/TG | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs7948946 | chr11:125587799 | A/G | 0.000104 | 178 | 16.1 | 14.35 | 5.03 | KM Plot |
| PAAD | rs79490164 | chr2:70482504 | C/T | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs79505001 | chr1:227578302 | C/T | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs79578285 | chr1:227573505 | T/C | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs79578615 | chr7:20643760 | T/C | 1.81E-6 | 178 | 15.53 | 15.57 | 3.67 | KM Plot |
| PAAD | rs79608947 | chr1:227508929 | G/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs79611117 | chr1:227339435 | A/G | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |